Difference between revisions of "Desktop Setup"

Latest revision as of 17:57, 27 April 2012

Distribution Setup

We support Red Hat compatible Linux distributions (CentOS, Fedora), but you need to maintain some security configuration and packages. Each distribution has its own problems, check the issues before deciding what distribution to install. The distributions should:

• Compile and run SESC and SESCTherm (with CUDA support)

• Run synos rake command

 svn co svn+ssh://mada0.cse.ucsc.edu/mada/server/svn/synos
 cd synos/scoore/fpu
 rake

• Execute vcs

 cd synos/scoore/fpu
 rake test:softfloat_tb

• Execute synplicity_pro

 cd synos/scoore/fpu
 rake fpga:fpu v=1
 ./synplify_fpu.sh

• Execute dc_shell-t

 cd synos/scoore/fpu
 rake asic:fpu v=1
 ./dc_fpu.sh

• Run opencv applications (cd mthd/mgesture)
• Run gosu examples (cd mthd/hdui)

Ubuntu 10.04

Preferred

Installation instructions at: Desktop Setup - Ubuntu 10.04

Configure LDAP caching

sudo apt-get install nss-updatedb
# Use your own username 
sudo scp username@mada0.cse.ucsc.edu:/etc/cron.hourly/* /etc/cron.hourly/

• update database cache

sudo /etc/cron.hourly/nss_updatedb-ldap.sh

• edit lines passwd and group in /etc/nsswitch.conf so that they are as follows (involves adding db before ldap)

sudo vi /etc/nsswitch.conf
passwd:         files db ldap
group:          files db ldap

CentOS 5.4

WORKS

sesc,sesctherm, synos, vcs, synplify_pro, dc_shell, opencv

FAILS

* gosu (gem rmagic and ruby-opengl package fail to install)
* sshfs (userspace ssh filesystem mount utility)
* Most modern linux kde related apps

Installation

Install the 64bit packages selecting development and latex packages.

# Update the yum repository (EPEL packages)
rpm -Uvh http://download.fedora.redhat.com/pub/epel/5/x86_64/epel-release-5-3.noarch.rpm

# Update distribution
yum update -y

# Editing packages
yum install -y aspell-en emacs openoffice firefox vim-X11

# Various fonts
yum install xorg-x11-fonts-100dpi-7.1-2.1.el5  xorg-x11-fonts-75dpi-7.1-2.1.el5 xorg-x11-fonts-ISO8859-1-100dpi-7.1-2.1.el5  xorg-x11-fonts-misc-7.1-2.1.el5  xorg-x11-fonts-truetype-7.1-2.1.el5

# Mathemathics packages
yum install -y R blas-devel gnuplot gsl-devel

# Version control and cmake
yum install -y cvs cmake git-all subversion

# SESC Development packages
yum install -y bison ctags cscope doxygen gcc gcc-c++ gcc-gfortran gcc-java m4 flex ncurses-devel

# Miscellaneous Development
yum install -y ant antlr boost-devel  fftw-devel vim-enhanced valgrind python-devel  qt4

# Compatiblity packages
yum install -y compat-db compat-db compat-gcc-34 compat-gcc-34-c++ compat-gcc-34-g77 compat-glibc
yum install -y compat-glibc compat-glibc-headers compat-libf2c-34 compat-libgcc-296 compat-libstdc++-296 
yum install -y compat-libstdc++-33 compat-libstdc++-33 compat-readline43 openmotif

# Ruby packages
yum install -y eruby-devel eruby-libs ruby-devel ruby-docs ruby-mode ruby-racc ruby-rdoc ruby-ri ruby-tcltk rubygem-rake rubygems

gem install --remote rspec
gem install rake rcov ruby-prof gecoder-with-gecode

# MT development
wget http://packages.sw.be/opencv/opencv-1.0.0-1.el5.rf.x86_64.rpm
wget http://packages.sw.be/opencv/opencv-devel-1.0.0-1.el5.rf.x86_64.rpm
rpm -i opencv*.rpm

yum install -y SDL_Pango-devel SDL_mixer-devel ImageMagick
gem install gosu

# Setup IP tables
Note: The iptables config file is only readable by root.  

# If you have root access a mascd machine:
   sudo scp mada0:/mada/server/setup/setup/iptables /etc/sysconfig/iptables

# If you only have sudo access on some mascdX machine:
#  ssh into that mascd machine, where X is the machine with the iptables file
   sudo cp /etc/sysconfig/iptables /tmp
   sudo chmod 777 /tmp/iptables
# Copy the file to your machine and restore correct permissions
   sudo scp madaX:/tmp/iptables /etc/sysconfig/iptables
   sudo chmod 600 /etc/sysconfig/iptables
# Lastly, erase the /tmp file on the mascdX machine, and restart iptables
#  ssh into it, rm /tmp/iptables
   sudo /etc/rc.d/init.d/iptables restart

# Setup services correctly
yum install -y chkconfig
scp mada0:/mada/server/setup/setup/setup.serv /root/setup.serv
for a in `grep "3:on" setup.serv  | cut -d0 -f1`; do chkconfig --level 3 $a on;  done
for a in `grep "3:off" setup.serv | cut -d0 -f1`; do chkconfig --level 3 $a off; done
for a in `grep "4:on" setup.serv  | cut -d0 -f1`; do chkconfig --level 4 $a on;  done
for a in `grep "4:off" setup.serv | cut -d0 -f1`; do chkconfig --level 4 $a off; done
for a in `grep "5:on" setup.serv  | cut -d0 -f1`; do chkconfig --level 5 $a on;  done
for a in `grep "5:off" setup.serv | cut -d0 -f1`; do chkconfig --level 5 $a off; done

# Setup automount
yum install -y autofs
mkdir /mada
unalias cp
scp mada1:/etc/auto.master /etc/
scp mada1:/etc/auto.mada /etc
service autofs restart

# LDAP setup
yum install -y openldap-clients
scp mada1:/etc/sysconfig/authconfig /etc/sysconfig/
scp mada1:/etc/ldap.conf /etc/
scp mada1:/etc/nsswitch.conf /etc
scp -r mada1:/etc/openldap/ldap.conf /etc/openldap/
scp -r mada1:/etc/openldap/cacerts/cert8.pem /etc/openldap/cacerts/

Fedora

WORKS

Fedora 10 x64 NOTE: most software is 64 bit, so make sure the x64 arch type is installed

• • Synplify Pro 9.62 is 32-bit. It needs:

a compatible libstdc++, tcl, qt To diagnose dependency problems: ldd /mada/software/synopsys/fpga_c200906/linux/mbin/synplify install by:

   sudo yum install -y compat-libstdc++-33-3.2.3-64.i386 compat-libstdc++-33-3.2.3-64.x86_64
   sudo yum install -y qt-4.4.3-15.fc10.i386 qt-x11-4.4.3-15.fc10.i386 tcl.i386 tcl.x86_64 nss_ldap-264-1.fc10.i386
   

Fedora 11:

   sudo yum install -y compat-libstdc++-33.i586 compat-libstdc++-33.x86_64 freetype-2.3.9-3.fc11.i586
   sudo yum install -y qt.i586 qt-x11.i586 fontconfig-2.7.1-1.fc11.i586 tcl.i586

Need this file, but problematic glib2-2.20.4-1.fc11.i586

DONE

• • VCS 2008-09 needs:

a compatible libstdc++ libtermcap

install by:

   sudo yum install -y compat-libstdc++-33-3.2.3-64.i386 compat-libstdc++-33-3.2.3-64.x86_64 libXt.i386

  # copy /lib64/libtermcap.so.2* from any mascd machine into your /lib64
  # then rebuild linker database:
  sudo ldconfig

  Note:  If using NFS mounted user directory, make sure to wipe out ./csrc directory (under which you invoke VCS) 
         you so that VCS rebuilds the design with the new GCC, otherwise it will not work.  This may
         become necessary if switching from Fedora to CentOS machines frequently.

DONE

• LDAP setup (NEED Root of mascd2 or working FC machine)

  sudo yum install -y openldap-clients
  scp mascd2:/etc/sysconfig/authconfig /etc/sysconfig/
  scp mascd2:/etc/ldap.conf /etc/
  scp mascd2:/etc/nsswitch.conf /etc
  scp -r mascd2:/etc/openldap/ldap.conf /etc/openldap/
  scp -r mascd2:/etc/openldap/cacerts/cert8.pem /etc/openldap/cacerts/
 
  run
  setup -> Authentication Configuration 
      User Information: 
          Cache Information
          Use LDAP
 
      Authentication:
          Use Shadow Passwords
          Use LDAP
          Local authorization is sufficient
      Next -> Finish
 
  Done
    

• Setup automount

  yum install -y autofs
  mkdir /mada
  unalias cp
  scp mascd1:/etc/auto.master mascd1:/etc/auto.mada /etc/
  service autofs restart

• Setup IP tables

Note: The iptables config file is only readable by root.  

# If you have root access a mascd machine:
   sudo scp mada0:/mada/server/setup/setup/iptables /etc/sysconfig/iptables

# If you only have sudo access on some mascdX machine:
#  ssh into that mascd machine, where X is the machine with the iptables file
   sudo cp /etc/sysconfig/iptables /tmp
   sudo chmod 777 /tmp/iptables
# Copy the file to your machine and restore correct permissions
   sudo scp madaX:/tmp/iptables /etc/sysconfig/iptables
   sudo chmod 600 /etc/sysconfig/iptables
# Lastly, erase the /tmp file on the mascdX machine, and restart iptables
#  ssh into it, rm /tmp/iptables
   sudo /etc/rc.d/init.d/iptables restart

• GOSU (ruby OpenGL lib)

First install Ruby and the like...

  sudo yum install -y ruby-1.8.6.287-2.fc10.x86_64 ruby-libs-1.8.6.287-2.fc10.x86_64 rubygem-rake-0.8.3-1.fc10.noarch ruby-devel-1.8.6.287-2.fc10.x86_64
  sudo yum install -y rubygems-1.3.1-1.fc10.noarch ruby-rdoc-1.8.6.287-2.fc10.x86_64  ruby-mode-1.8.6.287-2.fc10.x86_64 ruby-irb-1.8.6.287-2.fc10.x86_64

Then Install SDL audio related stuff

  sudo yum install -y SDL-1.2.13-7.fc10.i386  SDL-1.2.13-7.fc10.x86_64  SDL-devel-1.2.13-7.fc10.x86_64 
  sudo yum install -y SDL_mixer-1.2.8-9.fc10.x86_64 SDL_mixer-devel-1.2.8-9.fc10.x86_64 SDL_mixer-1.2.8-9.fc10.i386 SDL_mixer-devel-1.2.8-9.fc10.i386
     

Finally Gosu itself

  cd /tmp 
  sudo gem install gosu

DONE

Other important Libraries

1. Xilinx USB JTAG Cable 64 bit version

  We will need to install fxload, libusb-devel, libusb, libusb-driver and to run the Xilinx setup script
   sudo yum install fxload libusb libusb-devel

   cd ~
   wget "http://git.zerfleddert.de/cgi-bin/gitweb.cgi/usb-driver?a=snapshot;h=HEAD;sf=tgz"
   tar -zxvf usb-driver*
   cd usb-driver
   make
   sudo cp *so /usr/lib64

   sudo sh /mada/software/xilinx/ISE/bin/lin64/install_script/install_drivers/install_drivers 

   Plug in jtag cable and the amber or green light should turn on

   For further reference: http://www.rmdir.de/~michael/xilinx/

1. grmon (LEON3 JTAG Debug console)

  sudo yum install -y zlib.i686
  then run grmon-eval -xilusb -u (For Xilinx jtag)

1. PDF Printer

  This will create a pdf file in ~/, with spaces translated to underscores.
   sudo yum install cups-pdf

1. Cadence Virtuoso

  Install some libraries...
  FC 10:
   sudo yum install csh ksh elfutils-libelf.i386 libXp.i386 libXt.i386

  FC11:
   sudo yum install csh ksh elfutils-libelf.i586 libXp.i586 libXt.i586

 * Note: font errors and locking assertions are warnings and are non-fatal.

1. Matlab

   sudo yum install libXp.x86_64

1. DrawTiming

   sudo yum install ImageMagick-c++-devel

 then download DrawTiming and we have to add an include into src/timing.cc
   wget http://downloads.sourceforge.net/project/drawtiming/drawtiming/0.7.1/drawtiming-0.7.1.tar.gz?use_mirror=kent

   cd /tmp
   tar -zxvf drawtiming-0.7.1.tar.gz
   cd src
   vi timing.cc
   #insert #include "strings.h" into top of file
   cd ..
   make install

   or install as root: 
   sudo make install
  
   Note: that is a direct download link to drawtiming 0.7.1, a new version may be available.
   goto http://drawtiming.sourceforge.net/samples.html for instructions and samples

1. CUDA:

  Install nvidia driver, download 64 bit from nvidia.com
   sudo bash ./NVIDIA-Linux-x86_64-185.18.14-pkg2.run --no-x-check
 * Restart X server by logging out and back into X

  Install toolkit then SDK, download from nvidia.com
   sudo sh cudatoolkit_2.2_linux_64_fedora10.run
  
 * The SDK installs to your local home directory, so install as root 
   sh cudasdk_2.21_linux.run

1. nxserver: (VNC like service)

  Install freenx, then copy ssh certificates
   sudo yum install freenx
   sudo scp YOUR_USER_NAME@mada0:/etc/openldap/cacerts/*dsa* /etc/nxserver/
   sudo /etc/rc.d/init.d/freenx-server restart

1. nxclient - Linux:

  Install noMachine's nxClient, it's more refined then qtnx
   sudo rpm -i http://64.34.161.181/download/3.4.0/Linux/nxclient-3.4.0-5.x86_64.rpm

   Launch NX: 
    /usr/NX/bin/nxclient

   Import the client key after copying it to your desktop
    sudo cp /etc/nxserver/client.id_dsa.key ~/Desktop
    configure Key -> import -> Desktop/client.id_dsa.key

 Note: If the client displays the host's screen for 1 sec and quits, select gnome as the window manager in nxclient instead of kde.

1. nxclient - Windows

   Install noMachine's nxClient
    http://www.nomachine.com/download-package.php?Prod_Id=1411

    ssh into host machine: 
    sudo cat /etc/openldap/cacerts/client.id_dsa.key
    copy the contents of that file COMPLETELY, from --BEGIN to --END
    create a new file using textpad named client.id_dsa.key.txt
    paste contents into file.
    NxClient -> configure Key -> import -> Desktop/client.id_dsa.key.txt

 Note: If the client displays the host's screen for 1 sec and quits, select gnome as the window manager in nxclient instead of kde.

Shortcuts
Keystrokes available in NX 3.x
CTRL+Alt+Shift+Esc to get rid of a not responding session
Ctrl + Alt + T to terminate a session
Ctrl + Alt + F to switch to fullscreen/windowed
Ctrl + Alt + M to minimize or maximize fullscreen window
Ctrl + Alt + arrow keys to viewport navigation
Ctrl + Alt + keypad arrow keys to viewport navigation
Ctrl + Alt + R to switch auto-resize/viewport mode.
Ctrl + Alt + E to toggle the lazy encoding
Ctrl + Alt + J to fix a visualization problem
Alt + F4 when the window manager is present, suspend or terminate a session
Ctrl + Alt + K  enable/disable the catching of Alt+Tab and Print Screen keys 

DONE

1. nxclient - Mac

Download the program from: http://www.nomachine.com/download-client-macosx.php
Copy the server certificate just like the PC or Linux version.

1. Editing packages

   yum install -y aspell-en emacs openoffice firefox

1. Matlab Specific packages

   yum install -y libXp

1. Mathemathics packages

   yum install -y R blas-devel gnuplot gsl-devel

1. Version control and cmake

   yum install -y cvs cmake git-all

1. SESC Development packages

   yum install -y bison ctags cscope doxygen gcc gcc-c++ gcc-gfortran gcc-java m4 flex

1. Miscellaneous Development

   yum install -y ant antlr boost-devel  fftw-devel vim-enhanced valgrind 
   python-devel  qt4

1. Ruby / QtRuby / Korundum

   yum install -y ImageMagick-devel QtRuby QtRuby-devel korundum korundum-devel pdftk
   gem install pdf-toolkit rmagick gettext memcache-client  tzinfo  i18n builder  fast_xs json   (From /tmp directory)

KDE Unique settings on each Desktop / Server

• We are going to create as many kde directories (settings only) as we want.

 If we have mascd1, mascd7, mada1  we want to have 3 unique kde directories
 
 Copy your original .kde directory into the new 'unique' ones
   cp -fR ~/.kde ~/.kde_mascd1
   cp -fR ~/.kde ~/.kde_mascd7
   cp -fR ~/.kde ~/.kde_mada1

• Now that we have all the directories, add this to the bottom of your ~/.bashrc file

export hostn=`hostname |cut -f1 -d"."`
# If session is not NX, then normal kdehome for that client.
#  otherwise, use the nx desktop kde directory
if [ -z "$NXSESSIONID" ]
then
       export KDEHOME=~/.kde_$hostn
else
  export KDEHOME=~/.kde_`hostname |cut -f1 -d"."`nx
fi
#check if kde home directory exists, otherwise, set to default
if [ -f $KDEHOME ]
then
       export KDEHOME=~/.kde
fi

This script mainly works for use with NX sessions, it does not currently address being physically on multiple machines at once using KDE.

FAILS

Sun Grid Setup

1. Check if the machine is listed

qconf -sh

1. Otherwise add it to the list

qconf -ah ????

1. ssh to client (as root)

source /mada/software/setup.sh
cd /mada/users/sge

1. add this to services

sge_qmaster     536/tcp
sge_execd       537/tcp

1. Run installation (use default parameters)

./install_execd